Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners or grease it with non-stick spray.
In a large mixing bowl, combine the pumpkin puree, applesauce, brown sugar, granulated sugar, vegetable oil, eggs, and vanilla extract. Whisk until well combined.
In a separate bowl, mix together the flour, baking soda, baking powder, cinnamon, nutmeg, ginger, and salt.
Gradually add the dry ingredient mixture to the wet ingredients, stirring gently until just combined. Do not overmix!
Fold in the chocolate chips, ensuring even distribution throughout the batter.
Spoon the batter into the prepared muffin tin, filling each cavity about two-thirds full. If desired, sprinkle a few pumpkin seeds on top for added crunch.
Bake in the preheated oven for 18-20 minutes, or until a toothpick inserted into the center comes out clean.
Allow the muffins to cool in the tin for 5 minutes before transferring them to a wire rack to cool completely.
Notes
Serve warm with cream cheese spread and a sprinkle of cinnamon.